CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.82 rna-evm.model.Chr18.82 Chr18 3545098 3587738 PREDICTED: Annetocin receptor GO:0004930;GO:0005000;GO:0007186;GO:0016020 K04226
gene-evm.TU.Chr18.823 rna-evm.model.Chr18.823 Chr18 31451161 31480148 PREDICTED: Lipopolysaccharide-binding protein GO:0008289 K05399
gene-evm.TU.Chr18.824 rna-evm.model.Chr18.824 Chr18 31548496 31561976 uncharacterized protein nan K19910
gene-evm.TU.Chr18.826 rna-evm.model.Chr18.826 Chr18 31624828 31645889 PREDICTED: DnaJ homolog subfamily C member 7 GO:0005515 K09527
gene-evm.TU.Chr18.827 rna-evm.model.Chr18.827 Chr18 31665235 31669242 uncharacterized protein nan nan
gene-evm.TU.Chr18.828 rna-evm.model.Chr18.828 Chr18 31674476 31688191 PREDICTED: Peroxidasin homolog nan K19511
gene-evm.TU.Chr18.829 rna-evm.model.Chr18.829 Chr18 31695887 31778707 PREDICTED: Fibropellin-1 GO:0005509 K19511
gene-evm.TU.Chr18.831 rna-evm.model.Chr18.831 Chr18 31791790 31832127 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0005509 K06052
gene-evm.TU.Chr18.832 rna-evm.model.Chr18.832 Chr18 31846413 31861991 PREDICTED: Sodium- and chloride-dependent glycine transporter 1 GO:0016020 K05038
gene-evm.TU.Chr18.833 rna-evm.model.Chr18.833 Chr18 31879076 31880865 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.