CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.791 rna-evm.model.Chr18.791 Chr18 30248302 30279311 PREDICTED: Solute carrier family 15 member 2 GO:0016020;GO:0022857;GO:0055085 K14206
gene-evm.TU.Chr18.792 rna-evm.model.Chr18.792 Chr18 30296777 30428106 PREDICTED: Guanylate-binding protein 1 GO:0003924;GO:0005525 K20899
gene-evm.TU.Chr18.793 rna-evm.model.Chr18.793 Chr18 30438491 30440682 PREDICTED: Histone-lysine N-methyltransferase SETMAR nan K11433
gene-evm.TU.Chr18.794 rna-evm.model.Chr18.794 Chr18 30443859 30449614 uncharacterized protein nan K09928
gene-evm.TU.Chr18.795 rna-evm.model.Chr18.795 Chr18 30459596 30474345 PREDICTED: RCC1 and BTB domain-containing protein 1 GO:0005515 K11494
gene-evm.TU.Chr18.796 rna-evm.model.Chr18.796 Chr18 30476209 30483214 PREDICTED: Hemicentin-1 nan K16857
gene-evm.TU.Chr18.797 rna-evm.model.Chr18.797 Chr18 30486277 30488015 PREDICTED: Beta-1,2-xylosyltransferase GO:0016757 K03714
gene-evm.TU.Chr18.798 rna-evm.model.Chr18.798 Chr18 30553319 30554751 PREDICTED: Thyrotropin-releasing hormone receptor GO:0004930;GO:0007186;GO:0016020 K04282
gene-evm.TU.Chr18.800 rna-evm.model.Chr18.800 Chr18 30580192 30581025 PREDICTED: Galactoside 2-alpha-L-fucosyltransferase 1 GO:0005975;GO:0008107;GO:0016020 K00718
gene-evm.TU.Chr18.801 rna-evm.model.Chr18.801 Chr18 30597071 30597385 PREDICTED: 3-oxoacid CoA-transferase [EC:2.8.3.5] nan nan

For more detailed data, you can explore the Download section to access the full dataset.