CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.778 rna-evm.model.Chr18.778 Chr18 29869118 29892077 PREDICTED: ADP-ribose glycohydrolase MACROD2 GO:0005515;GO:0007165 K23518
gene-evm.TU.Chr18.779 rna-evm.model.Chr18.779 Chr18 29893205 29915500 PREDICTED: Ganglioside GM2 activator GO:0006689;GO:0008047 K12383
gene-evm.TU.Chr18.78 rna-evm.model.Chr18.78 Chr18 3132052 3133050 PREDICTED: vitamin D3 24-hydroxylase [EC:1.14.15.16] nan K26041
gene-evm.TU.Chr18.781 rna-evm.model.Chr18.781 Chr18 29913504 30036593 PREDICTED: Neurabin-2 GO:0005515 K17551
gene-evm.TU.Chr18.782 rna-evm.model.Chr18.782 Chr18 30042798 30049745 PREDICTED: Uncharacterized protein CXorf65 homolog nan K15299
gene-evm.TU.Chr18.783 rna-evm.model.Chr18.783 Chr18 30057820 30080962 PREDICTED: Serum paraoxonase/arylesterase 2 GO:0004064 K01045
gene-evm.TU.Chr18.784 rna-evm.model.Chr18.784 Chr18 30105191 30108857 PREDICTED: Ring canal kelch protein GO:0005515 K10449
gene-evm.TU.Chr18.786 rna-evm.model.Chr18.786 Chr18 30159380 30184902 PREDICTED: Ras-related protein Rab-5C GO:0003924;GO:0005525 K07889
gene-evm.TU.Chr18.789 rna-evm.model.Chr18.789 Chr18 30193771 30196548 PREDICTED: Glyoxylate reductase/hydroxypyruvate reductase GO:0016616;GO:0051287;GO:0055114 K00049
gene-evm.TU.Chr18.790 rna-evm.model.Chr18.790 Chr18 30212604 30244242 PREDICTED: Pre-mRNA-splicing factor CWC22 homolog GO:0003723;GO:0005515 K13100

For more detailed data, you can explore the Download section to access the full dataset.