CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.745 rna-evm.model.Chr18.745 Chr18 28681578 28689463 PREDICTED: Neurocan core protein nan K10064
gene-evm.TU.Chr18.746 rna-evm.model.Chr18.746 Chr18 28705971 28728135 PREDICTED: Puromycin-sensitive aminopeptidase GO:0006508;GO:0008237;GO:0008270 K08776
gene-evm.TU.Chr18.747 rna-evm.model.Chr18.747 Chr18 28735312 28743423 PREDICTED: mucin-4 nan K19908
gene-evm.TU.Chr18.751 rna-evm.model.Chr18.751 Chr18 28804309 28854745 PREDICTED: Frizzled-5 GO:0004888;GO:0005515;GO:0007166;GO:0016020;GO:0016020 K02375
gene-evm.TU.Chr18.752 rna-evm.model.Chr18.752 Chr18 28872308 28895838 PREDICTED: Cytosolic 10-formyltetrahydrofolate dehydrogenase GO:0009058;GO:0016742 K00289
gene-evm.TU.Chr18.753 rna-evm.model.Chr18.753 Chr18 28896389 28918075 PREDICTED: Cytosolic 10-formyltetrahydrofolate dehydrogenase GO:0016491;GO:0055114 K00289
gene-evm.TU.Chr18.754 rna-evm.model.Chr18.754 Chr18 28924910 28926298 PREDICTED: Transcription intermediary factor 1-alpha GO:0008270 K08881
gene-evm.TU.Chr18.755 rna-evm.model.Chr18.755 Chr18 28941457 28942839 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K08881
gene-evm.TU.Chr18.756 rna-evm.model.Chr18.756 Chr18 28999854 29076959 PREDICTED: Fibropellin-3 GO:0005509 K20994
gene-evm.TU.Chr18.757 rna-evm.model.Chr18.757 Chr18 29095702 29097045 PREDICTED: Transcription intermediary factor 1-alpha GO:0008270 K12026

For more detailed data, you can explore the Download section to access the full dataset.