CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.759 rna-evm.model.Chr18.759 Chr18 29134772 29148121 PREDICTED: Ectin (Fragment) nan K07521
gene-evm.TU.Chr18.76 rna-evm.model.Chr18.76 Chr18 3032746 3044951 PREDICTED: Hemicentin-1 nan K16857
gene-evm.TU.Chr18.760 rna-evm.model.Chr18.760 Chr18 29150264 29155222 PREDICTED: CUB and sushi domain-containing protein nan K22023
gene-evm.TU.Chr18.762 rna-evm.model.Chr18.762 Chr18 29189735 29190985 PREDICTED: Transcription intermediary factor 1-alpha GO:0008270 K12026
gene-evm.TU.Chr18.763 rna-evm.model.Chr18.763 Chr18 29223826 29237592 PREDICTED: exocyst complex component 1 nan K14458
gene-evm.TU.Chr18.764 rna-evm.model.Chr18.764 Chr18 29324447 29338648 PREDICTED: Major facilitator superfamily domain-containing protein 4A nan K08175
gene-evm.TU.Chr18.773 rna-evm.model.Chr18.773 Chr18 29714346 29717419 PREDICTED: P2X purinoceptor 7 nan K05220
gene-evm.TU.Chr18.774 rna-evm.model.Chr18.774 Chr18 29721078 29729358 PREDICTED: solute carrier family 8 (sodium/calcium exchanger) nan K16038
gene-evm.TU.Chr18.775 rna-evm.model.Chr18.775 Chr18 29740049 29756068 PREDICTED: Uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02 nan K24471
gene-evm.TU.Chr18.777 rna-evm.model.Chr18.777 Chr18 29840734 29862783 PREDICTED: Probable serine/threonine-protein kinase roco5 GO:0005515;GO:0007165 K08844

For more detailed data, you can explore the Download section to access the full dataset.