CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.718 rna-evm.model.Chr18.718 Chr18 28078943 28081186 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr18.719 rna-evm.model.Chr18.719 Chr18 28082607 28085764 PREDICTED: Complement C1q-like protein 3 nan K23284
gene-evm.TU.Chr18.720 rna-evm.model.Chr18.720 Chr18 28086797 28098425 PREDICTED: Complement C1q tumor necrosis factor-related protein 4 nan K24237
gene-evm.TU.Chr18.721 rna-evm.model.Chr18.721 Chr18 28100385 28109206 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr18.722 rna-evm.model.Chr18.722 Chr18 28114519 28125837 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr18.724 rna-evm.model.Chr18.724 Chr18 28152332 28157057 PREDICTED: Calmodulin GO:0005509 K02183
gene-evm.TU.Chr18.725 rna-evm.model.Chr18.725 Chr18 28171115 28177013 uncharacterized protein nan K06846
gene-evm.TU.Chr18.728 rna-evm.model.Chr18.728 Chr18 28369551 28370006 PREDICTED: Melanopsin GO:0004930;GO:0007186;GO:0016020 K04253
gene-evm.TU.Chr18.729 rna-evm.model.Chr18.729 Chr18 28410535 28413289 PREDICTED: Visual pigment-like receptor peropsin GO:0004930;GO:0007186;GO:0007601;GO:0016020 K04253
gene-evm.TU.Chr18.730 rna-evm.model.Chr18.730 Chr18 28473552 28478566 PREDICTED: Putative inhibitor of apoptosis nan K16061

For more detailed data, you can explore the Download section to access the full dataset.