CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.706 rna-evm.model.Chr18.706 Chr18 27357340 27362174 PREDICTED: Ras-related protein Rab-5C GO:0003924;GO:0005525 K07887
gene-evm.TU.Chr18.707 rna-evm.model.Chr18.707 Chr18 27378668 27382768 PREDICTED: GDP-perosamine synthase nan K13010
gene-evm.TU.Chr18.708 rna-evm.model.Chr18.708 Chr18 27410096 27415785 uncharacterized protein nan nan
gene-evm.TU.Chr18.709 rna-evm.model.Chr18.709 Chr18 27478067 27494382 PREDICTED: Lupus La protein homolog GO:0003676;GO:0003723;GO:0005634;GO:0006396;GO:1990904 K11090
gene-evm.TU.Chr18.71 rna-evm.model.Chr18.71 Chr18 2837909 2845939 PREDICTED: L-threonine ammonia-lyase nan K01754
gene-evm.TU.Chr18.710 rna-evm.model.Chr18.710 Chr18 27499745 27517186 PREDICTED: TGF-beta receptor type-1 GO:0004672;GO:0004675;GO:0005524;GO:0006468;GO:0007178;GO:0016020 K04674
gene-evm.TU.Chr18.712 rna-evm.model.Chr18.712 Chr18 27541156 27592537 PREDICTED: Oxysterol-binding protein-related protein 6 nan K20463
gene-evm.TU.Chr18.713 rna-evm.model.Chr18.713 Chr18 27615230 27622817 PREDICTED: Protein dachsous GO:0005509;GO:0007156;GO:0016020;GO:0098609 K16507
gene-evm.TU.Chr18.714 rna-evm.model.Chr18.714 Chr18 27625459 27644194 PREDICTED: Prolyl endopeptidase FAP GO:0006508;GO:0008236 K08674
gene-evm.TU.Chr18.715 rna-evm.model.Chr18.715 Chr18 27661865 27666219 uncharacterized protein nan K03597

For more detailed data, you can explore the Download section to access the full dataset.