CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.695 rna-evm.model.Chr18.695 Chr18 27101166 27126141 PREDICTED: Zinc finger protein 862 GO:0046983 K24642
gene-evm.TU.Chr18.697 rna-evm.model.Chr18.697 Chr18 27160672 27167847 PREDICTED: Collagen alpha-1(XII) chain GO:0005604;GO:0005615 K06238
gene-evm.TU.Chr18.698 rna-evm.model.Chr18.698 Chr18 27172364 27193010 PREDICTED: Acetylcholine receptor subunit beta-like 2 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr18.699 rna-evm.model.Chr18.699 Chr18 27194095 27196105 PREDICTED: Uncharacterized protein CXorf38 homolog nan K02718
gene-evm.TU.Chr18.700 rna-evm.model.Chr18.700 Chr18 27196445 27199357 PREDICTED: Inversin GO:0005515 K06694
gene-evm.TU.Chr18.701 rna-evm.model.Chr18.701 Chr18 27209184 27225047 PREDICTED: Acetylcholine receptor subunit alpha-type acr-16 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr18.702 rna-evm.model.Chr18.702 Chr18 27232010 27238461 uncharacterized protein nan nan
gene-evm.TU.Chr18.703 rna-evm.model.Chr18.703 Chr18 27251217 27306264 PREDICTED: Acetylcholine receptor subunit alpha-like 2 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr18.704 rna-evm.model.Chr18.704 Chr18 27316248 27324431 PREDICTED: Protein phosphatase 2C-like domain-containing protein 1 GO:0003824;GO:0004722;GO:0006470 K19704
gene-evm.TU.Chr18.705 rna-evm.model.Chr18.705 Chr18 27330438 27346538 PREDICTED: EF-hand domain-containing family member B GO:0005509 K23929

For more detailed data, you can explore the Download section to access the full dataset.