CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2812 rna-evm.model.Chr1.2812 Chr1 87799568 87809782 uncharacterized protein nan K19400
gene-evm.TU.Chr1.2813 rna-evm.model.Chr1.2813 Chr1 87843098 87844447 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr1.2815 rna-evm.model.Chr1.2815 Chr1 87909160 87925251 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K21754
gene-evm.TU.Chr1.2816 rna-evm.model.Chr1.2816 Chr1 88046522 88051328 PREDICTED: Exodeoxyribonuclease III nan nan
gene-evm.TU.Chr1.2818 rna-evm.model.Chr1.2818 Chr1 88069268 88070212 PREDICTED: protocadherin-15 nan K14404
gene-evm.TU.Chr1.2819 rna-evm.model.Chr1.2819 Chr1 88071150 88071758 PREDICTED: myotubularin-related protein 10/11/12 nan nan
gene-evm.TU.Chr1.282 rna-evm.model.Chr1.282 Chr1 8730542 8742352 uncharacterized protein nan nan
gene-evm.TU.Chr1.2820 rna-evm.model.Chr1.2820 Chr1 88071905 88072621 PREDICTED: vomeronasal 2 receptor nan K04763
gene-evm.TU.Chr1.2821 rna-evm.model.Chr1.2821 Chr1 88073198 88074794 PREDICTED: ESCRT-I complex subunit TSG101 nan K10804
gene-evm.TU.Chr1.2824 rna-evm.model.Chr1.2824 Chr1 88229159 88229587 PREDICTED: Histone-lysine N-methyltransferase SETMAR nan K22751

For more detailed data, you can explore the Download section to access the full dataset.