CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.684 rna-evm.model.Chr18.684 Chr18 26866070 26877532 PREDICTED: Lariat debranching enzyme GO:0006397;GO:0016787;GO:0016788 K18328
gene-evm.TU.Chr18.685 rna-evm.model.Chr18.685 Chr18 26880774 26932084 PREDICTED: Trafficking kinesin-binding protein 1 nan K15369
gene-evm.TU.Chr18.686 rna-evm.model.Chr18.686 Chr18 26941109 26944378 uncharacterized protein nan K18278
gene-evm.TU.Chr18.687 rna-evm.model.Chr18.687.14 Chr18 26944597 26982519 PREDICTED: Tetratricopeptide repeat protein 25 GO:0005515 K24254
gene-evm.TU.Chr18.688 rna-evm.model.Chr18.688 Chr18 26984608 26985654 uncharacterized protein nan K18531
gene-evm.TU.Chr18.689 rna-evm.model.Chr18.689 Chr18 26993849 27003633 PREDICTED: metalloproteinase inhibitor 2 GO:0005515;GO:0008191 K16866
gene-evm.TU.Chr18.69 rna-evm.model.Chr18.69 Chr18 2762291 2769936 PREDICTED: AF4/FMR2 family member 4 nan K16512
gene-evm.TU.Chr18.690 rna-evm.model.Chr18.690 Chr18 27007315 27010600 uncharacterized protein nan K21402
gene-evm.TU.Chr18.691 rna-evm.model.Chr18.691 Chr18 27016604 27023352 uncharacterized protein nan K21402
gene-evm.TU.Chr18.694 rna-evm.model.Chr18.694 Chr18 27084094 27088934 uncharacterized protein nan K13681

For more detailed data, you can explore the Download section to access the full dataset.