CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.671 rna-evm.model.Chr18.671 Chr18 26599048 26601824 PREDICTED: Protein Wnt-6 GO:0005102;GO:0005576;GO:0007275;GO:0016055 K00445
gene-evm.TU.Chr18.672 rna-evm.model.Chr18.672.1 Chr18 26605260 26639877 PREDICTED: Protein Wnt-1 GO:0005102;GO:0005576;GO:0007275;GO:0016055 K03209
gene-evm.TU.Chr18.673 rna-evm.model.Chr18.673 Chr18 26663624 26686461 PREDICTED: Protein Wnt-9a GO:0005102;GO:0005576;GO:0007275;GO:0016055 K01064
gene-evm.TU.Chr18.674 rna-evm.model.Chr18.674 Chr18 26696983 26705376 PREDICTED: Heterogeneous nuclear ribonucleoproteins A2/B1 GO:0003676;GO:0003729;GO:0007281 K13158
gene-evm.TU.Chr18.677 rna-evm.model.Chr18.677 Chr18 26735922 26750044 PREDICTED: Neuronal acetylcholine receptor subunit alpha-6 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr18.678 rna-evm.model.Chr18.678 Chr18 26750898 26751309 uncharacterized protein nan K04808
gene-evm.TU.Chr18.679 rna-evm.model.Chr18.679 Chr18 26759321 26763867 PREDICTED: Matrilin-2 nan K06238
gene-evm.TU.Chr18.681 rna-evm.model.Chr18.681 Chr18 26777546 26789343 PREDICTED: Uncharacterized protein C7orf57 nan nan
gene-evm.TU.Chr18.682 rna-evm.model.Chr18.682 Chr18 26797595 26800693 uncharacterized protein GO:0003676 K20828
gene-evm.TU.Chr18.683 rna-evm.model.Chr18.683 Chr18 26807990 26849718 PREDICTED: Tumor necrosis factor receptor superfamily member 16 GO:0005515;GO:0007165 K02583

For more detailed data, you can explore the Download section to access the full dataset.