CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.658 rna-evm.model.Chr18.658 Chr18 26202272 26210565 PREDICTED: COP9 signalosome complex subunit 8 GO:0000338;GO:0008180;GO:0010387 K12181
gene-evm.TU.Chr18.659 rna-evm.model.Chr18.659 Chr18 26229358 26242861 PREDICTED: Nuclear hormone receptor E75 GO:0003677;GO:0003700;GO:0003707;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K07294
gene-evm.TU.Chr18.66 rna-evm.model.Chr18.66 Chr18 2492593 2500127 PREDICTED: 39S ribosomal protein L10, mitochondrial GO:0042254 K02864
gene-evm.TU.Chr18.660 rna-evm.model.Chr18.660 Chr18 26250880 26253177 PREDICTED: Monocarboxylate transporter 14 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr18.661 rna-evm.model.Chr18.661 Chr18 26255880 26261079 uncharacterized protein nan K01992
gene-evm.TU.Chr18.662 rna-evm.model.Chr18.662 Chr18 26269762 26272011 PREDICTED: CD209 antigen-like protein E nan K10059
gene-evm.TU.Chr18.663 rna-evm.model.Chr18.663 Chr18 26273095 26285396 PREDICTED: Innexin unc-7 nan K22037
gene-evm.TU.Chr18.667 rna-evm.model.Chr18.667 Chr18 26467852 26484758 PREDICTED: Protein Wnt-10a GO:0005102;GO:0005576;GO:0007275;GO:0016055 K01357
gene-evm.TU.Chr18.67 rna-evm.model.Chr18.67 Chr18 2501345 2505097 PREDICTED: Perlucin-like protein nan K06721
gene-evm.TU.Chr18.670 rna-evm.model.Chr18.670 Chr18 26567587 26593748 PREDICTED: Protein Wnt-6 GO:0005102;GO:0005576;GO:0007275;GO:0016055 K00445

For more detailed data, you can explore the Download section to access the full dataset.