CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.648 rna-evm.model.Chr18.648 Chr18 25904990 25908437 PREDICTED: Alpha-(1,3)-fucosyltransferase C GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr18.649 rna-evm.model.Chr18.649 Chr18 25910832 25922357 PREDICTED: MAGUK p55 subfamily member 2 GO:0005515 K24048
gene-evm.TU.Chr18.65 rna-evm.model.Chr18.65 Chr18 2464651 2471497 PREDICTED: deleted in malignant brain tumors 1 protein nan K08654
gene-evm.TU.Chr18.651 rna-evm.model.Chr18.651 Chr18 25936520 25937104 uncharacterized protein nan K06093
gene-evm.TU.Chr18.652 rna-evm.model.Chr18.652 Chr18 25963197 25964450 PREDICTED: Glycoprotein 3-alpha-L-fucosyltransferase A GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr18.653 rna-evm.model.Chr18.653 Chr18 26027509 26051799 uncharacterized protein nan K19425
gene-evm.TU.Chr18.654 rna-evm.model.Chr18.654.1 Chr18 26060196 26084245 PREDICTED: Armadillo repeat-containing protein 4 GO:0005515 K24125
gene-evm.TU.Chr18.655 rna-evm.model.Chr18.655 Chr18 26113521 26123879 PREDICTED: CD63 antigen GO:0016020 K06497
gene-evm.TU.Chr18.656 rna-evm.model.Chr18.656 Chr18 26132946 26146833 PREDICTED: Solute carrier organic anion transporter family member 4A1 GO:0005215;GO:0005515;GO:0016020;GO:0055085 K14354
gene-evm.TU.Chr18.657 rna-evm.model.Chr18.657 Chr18 26165730 26196950 PREDICTED: General receptor for phosphoinositides 1-associated scaffold protein GO:0005515 K24053

For more detailed data, you can explore the Download section to access the full dataset.