CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.638 rna-evm.model.Chr18.638 Chr18 25618378 25638549 PREDICTED: Mannose-1-phosphate guanyltransferase alpha-A GO:0009058;GO:0016779 K00966
gene-evm.TU.Chr18.639 rna-evm.model.Chr18.639 Chr18 25649813 25682172 PREDICTED: D(2) dopamine receptor GO:0004930;GO:0007186;GO:0016020 K08439
gene-evm.TU.Chr18.64 rna-evm.model.Chr18.64 Chr18 2346811 2456897 PREDICTED: Flagellar attachment zone protein 1 GO:0005576;GO:0006030;GO:0008061 K18626
gene-evm.TU.Chr18.640 rna-evm.model.Chr18.640 Chr18 25687584 25694254 PREDICTED: Innexin unc-9 nan K22037
gene-evm.TU.Chr18.641 rna-evm.model.Chr18.641.2 Chr18 25707545 25714540 PREDICTED: Protein arginine N-methyltransferase 2 GO:0005515;GO:0006479;GO:0008168 K11435
gene-evm.TU.Chr18.642 rna-evm.model.Chr18.642 Chr18 25748516 25806304 PREDICTED: Vesicle-fusing ATPase 1 GO:0005524;GO:0016887;GO:0035494 K06027
gene-evm.TU.Chr18.644 rna-evm.model.Chr18.644 Chr18 25820442 25829093 PREDICTED: NACHT, LRR and PYD domains-containing protein 3 nan K12805
gene-evm.TU.Chr18.645 rna-evm.model.Chr18.645 Chr18 25838489 25894726 PREDICTED: DnaJ homolog subfamily C member 13 nan K09533
gene-evm.TU.Chr18.646 rna-evm.model.Chr18.646 Chr18 25894796 25900324 PREDICTED: Leucine-rich repeat and death domain-containing protein 1 GO:0005515;GO:0007165 K24055
gene-evm.TU.Chr18.647 rna-evm.model.Chr18.647 Chr18 25900774 25901837 PREDICTED: myosin VIIa nan nan

For more detailed data, you can explore the Download section to access the full dataset.