CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.628 rna-evm.model.Chr18.628 Chr18 25215398 25218823 uncharacterized protein nan K11520
gene-evm.TU.Chr18.629 rna-evm.model.Chr18.629 Chr18 25237998 25238957 PREDICTED: Protein unc-13 homolog C nan K06286
gene-evm.TU.Chr18.63 rna-evm.model.Chr18.63 Chr18 2335310 2338135 PREDICTED: mitogen-activated protein kinase kinase kinase 13 [EC:2.7.11.25] nan K24512
gene-evm.TU.Chr18.630 rna-evm.model.Chr18.630 Chr18 25268182 25288231 uncharacterized protein nan nan
gene-evm.TU.Chr18.632 rna-evm.model.Chr18.632 Chr18 25368146 25378986 PREDICTED: Protein-glucosylgalactosylhydroxylysine glucosidase GO:0003824;GO:0005975 K22078
gene-evm.TU.Chr18.633 rna-evm.model.Chr18.633 Chr18 25394756 25404342 uncharacterized protein nan K00618
gene-evm.TU.Chr18.634 rna-evm.model.Chr18.634 Chr18 25422295 25428934 PREDICTED: NIMA (never in mitosis gene a)-related kinase 1/4/5 [EC:2.7.11.1] nan K24637
gene-evm.TU.Chr18.635 rna-evm.model.Chr18.635 Chr18 25562530 25570540 PREDICTED: Peptidyl-prolyl cis-trans isomerase FKBP14 GO:0003755;GO:0005509 K09577
gene-evm.TU.Chr18.636 rna-evm.model.Chr18.636 Chr18 25580520 25595394 uncharacterized protein nan K11244
gene-evm.TU.Chr18.637 rna-evm.model.Chr18.637 Chr18 25614656 25615745 PREDICTED: Somatostatin receptor type 4 GO:0004930;GO:0007186;GO:0016020 K04218

For more detailed data, you can explore the Download section to access the full dataset.