CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.615 rna-evm.model.Chr18.615 Chr18 24664728 24718022 PREDICTED: Deleted in malignant brain tumors 1 protein nan K24793
gene-evm.TU.Chr18.617 rna-evm.model.Chr18.617 Chr18 24731884 24738607 uncharacterized protein nan nan
gene-evm.TU.Chr18.618 rna-evm.model.Chr18.618 Chr18 24741650 24763814 uncharacterized protein nan nan
gene-evm.TU.Chr18.619 rna-evm.model.Chr18.619 Chr18 24766727 24767442 uncharacterized protein nan nan
gene-evm.TU.Chr18.62 rna-evm.model.Chr18.62 Chr18 2328961 2333061 PREDICTED: mucin-2-like, partial nan K24831
gene-evm.TU.Chr18.620 rna-evm.model.Chr18.620 Chr18 24784174 24822336 PREDICTED: Dipeptidyl peptidase 4 GO:0006508;GO:0008236 K23014
gene-evm.TU.Chr18.624 rna-evm.model.Chr18.624 Chr18 25057652 25058254 PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] nan K03006
gene-evm.TU.Chr18.625 rna-evm.model.Chr18.625 Chr18 25081163 25083677 PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D GO:0003676;GO:0003677 K07494
gene-evm.TU.Chr18.626 rna-evm.model.Chr18.626 Chr18 25192152 25194434 PREDICTED: decay accelerating factor nan K15125
gene-evm.TU.Chr18.627 rna-evm.model.Chr18.627 Chr18 25204183 25204735 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.