CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.590 rna-evm.model.Chr18.590 Chr18 23605538 23605742 uncharacterized protein nan nan
gene-evm.TU.Chr18.593 rna-evm.model.Chr18.593 Chr18 23742568 23751576 uncharacterized protein nan K04763
gene-evm.TU.Chr18.594 rna-evm.model.Chr18.594 Chr18 23778469 23780911 PREDICTED: AF4/FMR2 family member 4 nan K04223
gene-evm.TU.Chr18.595 rna-evm.model.Chr18.595 Chr18 23790754 23805877 uncharacterized protein nan nan
gene-evm.TU.Chr18.597 rna-evm.model.Chr18.597 Chr18 23839300 23840331 PREDICTED: Integrase/recombinase xerD homolog nan K04763
gene-evm.TU.Chr18.598 rna-evm.model.Chr18.598 Chr18 23834807 23849626 PREDICTED: Con-Ins Im2 GO:0005179;GO:0005576 K04526
gene-evm.TU.Chr18.599 rna-evm.model.Chr18.599 Chr18 23861292 23865801 PREDICTED: E3 ubiquitin-protein ligase TRIM71 GO:0005515;GO:0008270 K12026
gene-evm.TU.Chr18.60 rna-evm.model.Chr18.60 Chr18 2286473 2317340 PREDICTED: Low-density lipoprotein receptor-related protein 2 GO:0005515 K20051
gene-evm.TU.Chr18.601 rna-evm.model.Chr18.601 Chr18 23879036 23888509 PREDICTED: Syntaxin-17 GO:0000149;GO:0006888;GO:0097111;GO:0097352 K08491
gene-evm.TU.Chr18.602 rna-evm.model.Chr18.602.1 Chr18 23899458 23952271 PREDICTED: DNA topoisomerase 2-alpha GO:0003677;GO:0003918;GO:0005524;GO:0006265 K03164

For more detailed data, you can explore the Download section to access the full dataset.