CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.58 rna-evm.model.Chr18.58 Chr18 2210915 2256149 PREDICTED: Low-density lipoprotein receptor-related protein 2 GO:0005515 K06233
gene-evm.TU.Chr18.580 rna-evm.model.Chr18.580 Chr18 23234769 23237206 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K12026
gene-evm.TU.Chr18.581 rna-evm.model.Chr18.581 Chr18 23246735 23248915 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr18.582 rna-evm.model.Chr18.582 Chr18 23199217 23302629 PREDICTED: Histone-lysine N-methyltransferase SETD2 GO:0005515;GO:0005634;GO:0018024;GO:0046975;GO:0097198 K11423
gene-evm.TU.Chr18.583 rna-evm.model.Chr18.583 Chr18 23316615 23319459 PREDICTED: Protein PLANT CADMIUM RESISTANCE 7 nan nan
gene-evm.TU.Chr18.585 rna-evm.model.Chr18.585 Chr18 23400104 23525709 PREDICTED: Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C GO:0004114;GO:0007165;GO:0008081 K13755
gene-evm.TU.Chr18.586 rna-evm.model.Chr18.586 Chr18 23526185 23530118 PREDICTED: P2X purinoceptor 7 nan K05220
gene-evm.TU.Chr18.587 rna-evm.model.Chr18.587 Chr18 23531543 23539058 PREDICTED: THAP domain-containing protein 11 GO:0003676 K23204
gene-evm.TU.Chr18.589 rna-evm.model.Chr18.589 Chr18 23580401 23590857 PREDICTED: Prestalk protein nan K08720
gene-evm.TU.Chr18.59 rna-evm.model.Chr18.59 Chr18 2256259 2285265 PREDICTED: CUB and sushi domain-containing protein 3 nan K01335

For more detailed data, you can explore the Download section to access the full dataset.