CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2792 rna-evm.model.Chr1.2792 Chr1 87158782 87216479 uncharacterized protein nan K20309
gene-evm.TU.Chr1.2794 rna-evm.model.Chr1.2794 Chr1 87211802 87226165 PREDICTED: Transposable element Tcb2 transposase GO:0003677;GO:0006313;GO:0015074 K04958
gene-evm.TU.Chr1.2796 rna-evm.model.Chr1.2796 Chr1 87238597 87240938 PREDICTED: phosphatidic acid-selective phospholipase A1 [EC:3.1.1.-] GO:0005179;GO:0005576 nan
gene-evm.TU.Chr1.2798 rna-evm.model.Chr1.2798 Chr1 87299008 87299886 PREDICTED: structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6) nan K06896
gene-evm.TU.Chr1.2799 rna-evm.model.Chr1.2799 Chr1 87334439 87334833 PREDICTED: Exodeoxyribonuclease III nan nan
gene-evm.TU.Chr1.280 rna-evm.model.Chr1.280 Chr1 8617544 8634621 uncharacterized protein nan nan
gene-evm.TU.Chr1.2801 rna-evm.model.Chr1.2801 Chr1 87440588 87456476 PREDICTED: Beta-1,4-N-acetylgalactosaminyltransferase bre-4 GO:0005975;GO:0016757 K07968
gene-evm.TU.Chr1.2803 rna-evm.model.Chr1.2803 Chr1 87467844 87470334 PREDICTED: myotubularin-related protein 10/11/12 nan K14404
gene-evm.TU.Chr1.2809 rna-evm.model.Chr1.2809 Chr1 87695418 87696458 PREDICTED: Neuropeptide receptor 22 GO:0004930;GO:0007186;GO:0016020 K04233
gene-evm.TU.Chr1.281 rna-evm.model.Chr1.281 Chr1 8673729 8696046 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.