CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.564 rna-evm.model.Chr18.564 Chr18 22697946 22705554 PREDICTED: plasminogen [EC:3.4.21.7] nan K14590
gene-evm.TU.Chr18.569 rna-evm.model.Chr18.569 Chr18 22754155 22762357 PREDICTED: Melanopsin-B GO:0004930;GO:0007186;GO:0016020 K04256
gene-evm.TU.Chr18.57 rna-evm.model.Chr18.57 Chr18 2187314 2210757 PREDICTED: Low-density lipoprotein receptor-related protein 2 GO:0005515 K06233
gene-evm.TU.Chr18.571 rna-evm.model.Chr18.571 Chr18 22763868 22779590 PREDICTED: Pineal opsin GO:0004930;GO:0007186;GO:0016020 K04256
gene-evm.TU.Chr18.572 rna-evm.model.Chr18.572 Chr18 22787848 22794540 PREDICTED: Apolipoprotein(a) (Fragment) nan K01315
gene-evm.TU.Chr18.573 rna-evm.model.Chr18.573 Chr18 22949965 22952485 PREDICTED: Cerebellin-3 nan K23284
gene-evm.TU.Chr18.575 rna-evm.model.Chr18.575 Chr18 23042330 23146640 PREDICTED: Innexin unc-9 nan K22037
gene-evm.TU.Chr18.577 rna-evm.model.Chr18.577 Chr18 23164875 23173400 PREDICTED: Neuronal acetylcholine receptor subunit alpha-7 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05312
gene-evm.TU.Chr18.578 rna-evm.model.Chr18.578 Chr18 23175913 23187078 PREDICTED: Neuronal acetylcholine receptor subunit alpha-6 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr18.579 rna-evm.model.Chr18.579 Chr18 23189453 23216043 PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25 GO:0008270 K12026

For more detailed data, you can explore the Download section to access the full dataset.