CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.529 rna-evm.model.Chr18.529 Chr18 21328274 21331968 PREDICTED: Purpurin nan K18271
gene-evm.TU.Chr18.53 rna-evm.model.Chr18.53 Chr18 2074128 2077037 PREDICTED: IMP dehydrogenase [EC:1.1.1.205] nan K11703
gene-evm.TU.Chr18.530 rna-evm.model.Chr18.530 Chr18 21339574 21350736 PREDICTED: Aprataxin GO:0003824 K10863
gene-evm.TU.Chr18.531 rna-evm.model.Chr18.531 Chr18 21351175 21363646 PREDICTED: Prohibitin-4, mitochondrial nan K04088
gene-evm.TU.Chr18.532 rna-evm.model.Chr18.532 Chr18 21372942 21379432 PREDICTED: prohibitin 2 nan K04088
gene-evm.TU.Chr18.533 rna-evm.model.Chr18.533 Chr18 21383462 21392021 PREDICTED: Epidermal growth factor receptor GO:0004714;GO:0005524;GO:0006468;GO:0007169;GO:0016020 K04361
gene-evm.TU.Chr18.534 rna-evm.model.Chr18.534 Chr18 21400821 21436586 PREDICTED: Myosin light chain kinase, smooth muscle GO:0004672;GO:0005515;GO:0005524;GO:0006468 K00907
gene-evm.TU.Chr18.535 rna-evm.model.Chr18.535.2 Chr18 21572615 21797644 PREDICTED: Titin GO:0005515 K12567
gene-evm.TU.Chr18.536 rna-evm.model.Chr18.536 Chr18 21819694 21857923 PREDICTED: Tyrosine-protein phosphatase non-receptor type 23 GO:0004725;GO:0005515;GO:0006470;GO:0016311;GO:0016791 K18040
gene-evm.TU.Chr18.537 rna-evm.model.Chr18.537 Chr18 21857431 21896755 PREDICTED: Adhesion G-protein coupled receptor G4 GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020 K08455

For more detailed data, you can explore the Download section to access the full dataset.