CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.538 rna-evm.model.Chr18.538 Chr18 21947400 21957424 uncharacterized protein nan nan
gene-evm.TU.Chr18.539 rna-evm.model.Chr18.539 Chr18 21979896 22017375 PREDICTED: BMP-binding endothelial regulator protein GO:0005515 K24517
gene-evm.TU.Chr18.54 rna-evm.model.Chr18.54 Chr18 2092216 2098836 PREDICTED: Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C nan K13748
gene-evm.TU.Chr18.540 rna-evm.model.Chr18.540.1 Chr18 22053903 22099440 uncharacterized protein nan K04674
gene-evm.TU.Chr18.541 rna-evm.model.Chr18.541 Chr18 22110058 22110996 PREDICTED: endonuclease domain-containing 1 protein nan K15049
gene-evm.TU.Chr18.542 rna-evm.model.Chr18.542 Chr18 22115006 22116757 PREDICTED: endonuclease domain-containing 1 protein nan K15049
gene-evm.TU.Chr18.543 rna-evm.model.Chr18.543 Chr18 22133402 22148838 PREDICTED: Sodium/hydrogen exchanger 9B2 GO:0006812;GO:0015299;GO:0016020;GO:0055085 K23994
gene-evm.TU.Chr18.544 rna-evm.model.Chr18.544 Chr18 22152904 22242374 PREDICTED: Receptor-type tyrosine-protein phosphatase kappa GO:0004725;GO:0006470;GO:0016311;GO:0016791 K06776
gene-evm.TU.Chr18.546 rna-evm.model.Chr18.546 Chr18 22307009 22313386 uncharacterized protein nan K20413
gene-evm.TU.Chr18.550 rna-evm.model.Chr18.550 Chr18 22354817 22360726 PREDICTED: Receptor-type tyrosine-protein phosphatase kappa GO:0004725;GO:0006470;GO:0016311;GO:0016791 K06776

For more detailed data, you can explore the Download section to access the full dataset.