CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.516 rna-evm.model.Chr18.516 Chr18 20626941 20634255 PREDICTED: Oncoprotein-induced transcript 3 protein nan K18274
gene-evm.TU.Chr18.517 rna-evm.model.Chr18.517 Chr18 20635222 20655650 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K03900
gene-evm.TU.Chr18.518 rna-evm.model.Chr18.518 Chr18 20659774 20684384 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K24434
gene-evm.TU.Chr18.519 rna-evm.model.Chr18.519 Chr18 20695412 20772321 PREDICTED: Mitogen-activated protein kinase kinase kinase 12 GO:0004672;GO:0005524;GO:0006468 K04422
gene-evm.TU.Chr18.52 rna-evm.model.Chr18.52 Chr18 2028843 2046439 PREDICTED: Signal peptide, CUB and EGF-like domain-containing protein 3 nan K08654
gene-evm.TU.Chr18.520 rna-evm.model.Chr18.520 Chr18 20775470 20778354 PREDICTED: Retinol-binding protein 4 GO:0005501;GO:0031409;GO:0034632 K18271
gene-evm.TU.Chr18.521 rna-evm.model.Chr18.521 Chr18 20781115 20788281 PREDICTED: Tubulin polyglutamylase complex subunit 1 GO:0018095 K16581
gene-evm.TU.Chr18.522 rna-evm.model.Chr18.522 Chr18 20791758 20802325 PREDICTED: Multidrug resistance-associated protein 1 GO:0005524;GO:0016020;GO:0042626;GO:0055085 K05665
gene-evm.TU.Chr18.526 rna-evm.model.Chr18.526 Chr18 20965543 21041760 PREDICTED: Epidermal growth factor receptor GO:0004672;GO:0004713;GO:0004714;GO:0005524;GO:0006468;GO:0007169;GO:0016020 K04361
gene-evm.TU.Chr18.527 rna-evm.model.Chr18.527.1 Chr18 21076539 21149190 PREDICTED: Epidermal growth factor receptor GO:0004714;GO:0005524;GO:0006468;GO:0007169;GO:0016020 K04361

For more detailed data, you can explore the Download section to access the full dataset.