CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.497 rna-evm.model.Chr18.497 Chr18 19755360 19759764 uncharacterized protein nan nan
gene-evm.TU.Chr18.498 rna-evm.model.Chr18.498 Chr18 19763963 19779576 PREDICTED: RING finger protein nhl-1 nan K11997
gene-evm.TU.Chr18.499 rna-evm.model.Chr18.499 Chr18 19781517 19811818 uncharacterized protein nan K13095
gene-evm.TU.Chr18.500 rna-evm.model.Chr18.500 Chr18 19817309 19821562 uncharacterized protein nan K18263
gene-evm.TU.Chr18.507 rna-evm.model.Chr18.507 Chr18 20361879 20365371 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr18.508 rna-evm.model.Chr18.508 Chr18 20379084 20384926 PREDICTED: Cardioacceleratory peptide receptor GO:0004930;GO:0005000;GO:0007186;GO:0016020 K08376
gene-evm.TU.Chr18.509 rna-evm.model.Chr18.509 Chr18 20392831 20411313 PREDICTED: Cardioacceleratory peptide receptor GO:0004930;GO:0007186;GO:0016020 K08376
gene-evm.TU.Chr18.511 rna-evm.model.Chr18.511 Chr18 20489361 20546717 PREDICTED: Myosin-IIIa GO:0003774;GO:0004672;GO:0005515;GO:0005524;GO:0006468;GO:0016459 K08834
gene-evm.TU.Chr18.514 rna-evm.model.Chr18.514 Chr18 20562123 20588031 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K24434
gene-evm.TU.Chr18.515 rna-evm.model.Chr18.515 Chr18 20590521 20618055 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K03900

For more detailed data, you can explore the Download section to access the full dataset.