CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.487 rna-evm.model.Chr18.487 Chr18 19490246 19495228 uncharacterized protein nan nan
gene-evm.TU.Chr18.488 rna-evm.model.Chr18.488 Chr18 19503614 19524497 PREDICTED: Coiled-coil domain-containing protein 14 nan K16541
gene-evm.TU.Chr18.489 rna-evm.model.Chr18.489 Chr18 19550199 19606730 PREDICTED: Krueppel-like factor 7 GO:0003676 K09207
gene-evm.TU.Chr18.49 rna-evm.model.Chr18.49 Chr18 1990353 2001302 PREDICTED: Putative ankyrin repeat protein MM_0045 GO:0005515 K06694
gene-evm.TU.Chr18.491 rna-evm.model.Chr18.491 Chr18 19625169 19625666 PREDICTED: PiggyBac transposable element-derived protein 5 nan nan
gene-evm.TU.Chr18.492 rna-evm.model.Chr18.492 Chr18 19625920 19632951 uncharacterized protein nan nan
gene-evm.TU.Chr18.493 rna-evm.model.Chr18.493 Chr18 19640249 19648006 uncharacterized protein nan K11755
gene-evm.TU.Chr18.494 rna-evm.model.Chr18.494 Chr18 19687839 19708797 PREDICTED: Putative ankyrin repeat protein FPV246 GO:0005515 K04984
gene-evm.TU.Chr18.495 rna-evm.model.Chr18.495 Chr18 19712925 19726064 PREDICTED: Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B GO:0005515 K21440
gene-evm.TU.Chr18.496 rna-evm.model.Chr18.496 Chr18 19737737 19751248 PREDICTED: Caspase-8 GO:0004197;GO:0005515;GO:0006508;GO:0008234;GO:0042981 K04398

For more detailed data, you can explore the Download section to access the full dataset.