CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.463 rna-evm.model.Chr18.463 Chr18 18575430 18690296 PREDICTED: Innexin unc-9 nan K22037
gene-evm.TU.Chr18.464 rna-evm.model.Chr18.464 Chr18 18717981 18753257 PREDICTED: Ubiquitin-conjugating enzyme E2-24 kDa nan K20217
gene-evm.TU.Chr18.465 rna-evm.model.Chr18.465 Chr18 18766367 18846266 PREDICTED: sperm-specific antigen 2-like GO:0005102 K12537
gene-evm.TU.Chr18.466 rna-evm.model.Chr18.466 Chr18 18850799 18918042 PREDICTED: Hemicentin-1 nan K16857
gene-evm.TU.Chr18.467 rna-evm.model.Chr18.467 Chr18 18929770 18978228 PREDICTED: Coadhesin (Fragment) nan K16857
gene-evm.TU.Chr18.469 rna-evm.model.Chr18.469 Chr18 19003345 19008576 PREDICTED: Hemicentin-1 nan K16857
gene-evm.TU.Chr18.47 rna-evm.model.Chr18.47 Chr18 1901172 1965882 PREDICTED: Low-density lipoprotein receptor-related protein 2 GO:0005509;GO:0005515 K06233
gene-evm.TU.Chr18.470 rna-evm.model.Chr18.470 Chr18 19013212 19020811 PREDICTED: Hemicentin-1 nan K16857
gene-evm.TU.Chr18.471 rna-evm.model.Chr18.471 Chr18 19027214 19036559 PREDICTED: Complement C1q-like protein 3 nan K24237
gene-evm.TU.Chr18.472 rna-evm.model.Chr18.472 Chr18 19044149 19050361 PREDICTED: Baculoviral IAP repeat-containing protein 7 nan K12807

For more detailed data, you can explore the Download section to access the full dataset.