CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.45 rna-evm.model.Chr18.45 Chr18 1870975 1871280 uncharacterized protein nan nan
gene-evm.TU.Chr18.451 rna-evm.model.Chr18.451 Chr18 18133237 18189130 PREDICTED: Neurobeachin-like protein 1 GO:0005515 K23286
gene-evm.TU.Chr18.452 rna-evm.model.Chr18.452 Chr18 18206188 18211939 uncharacterized protein nan K10059
gene-evm.TU.Chr18.453 rna-evm.model.Chr18.453 Chr18 18240280 18268493 PREDICTED: Thrombospondin-type laminin G domain and EAR repeat-containing protein nan K24437
gene-evm.TU.Chr18.454 rna-evm.model.Chr18.454 Chr18 18278908 18296252 PREDICTED: DnaJ homolog subfamily B member 11 nan K09517
gene-evm.TU.Chr18.456 rna-evm.model.Chr18.456 Chr18 18305314 18323229 PREDICTED: Acyl-CoA 6-desaturase GO:0006629 K10226
gene-evm.TU.Chr18.458 rna-evm.model.Chr18.458 Chr18 18414573 18419381 PREDICTED: Melanopsin GO:0004930;GO:0007186;GO:0016020 K04256
gene-evm.TU.Chr18.459 rna-evm.model.Chr18.459 Chr18 18426136 18431009 PREDICTED: AF4/FMR2 family member 4 nan K16512
gene-evm.TU.Chr18.460 rna-evm.model.Chr18.460 Chr18 18464489 18473911 PREDICTED: DBH-like monooxygenase protein 1 GO:0004497;GO:0005507;GO:0016715;GO:0055114 K00503
gene-evm.TU.Chr18.462 rna-evm.model.Chr18.462 Chr18 18547869 18556115 PREDICTED: Innexin unc-9 nan K22037

For more detailed data, you can explore the Download section to access the full dataset.