CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.433 rna-evm.model.Chr18.433 Chr18 17335680 17336646 PREDICTED: AF4/FMR2 family member 4 nan K04223
gene-evm.TU.Chr18.434 rna-evm.model.Chr18.434 Chr18 17400359 17410008 PREDICTED: Putative ankyrin repeat protein MM_0045 GO:0005515 K06694
gene-evm.TU.Chr18.438_evm.TU.Chr18.439 rna-evm.model.Chr18.438_evm.model.Chr18.439 Chr18 17452314 17590350 PREDICTED: Flagellar attachment zone protein 1 GO:0005515;GO:0005576;GO:0006030;GO:0008061 K08654
gene-evm.TU.Chr18.440 rna-evm.model.Chr18.440 Chr18 17598368 17601193 uncharacterized protein nan K09849
gene-evm.TU.Chr18.441 rna-evm.model.Chr18.441 Chr18 17603643 17605596 PREDICTED: meprin B [EC:3.4.24.63] nan K20413
gene-evm.TU.Chr18.442 rna-evm.model.Chr18.442 Chr18 17677376 17688870 PREDICTED: L-threonine ammonia-lyase nan K01754
gene-evm.TU.Chr18.445 rna-evm.model.Chr18.445 Chr18 18006635 18010918 PREDICTED: Perlucin-like protein nan K06721
gene-evm.TU.Chr18.446 rna-evm.model.Chr18.446 Chr18 18013698 18019494 PREDICTED: 39S ribosomal protein L10, mitochondrial GO:0042254 K02864
gene-evm.TU.Chr18.447 rna-evm.model.Chr18.447 Chr18 18035179 18042320 PREDICTED: Hyccin nan K21844
gene-evm.TU.Chr18.449 rna-evm.model.Chr18.449 Chr18 18068893 18100890 PREDICTED: Protein FAM126B nan K21844

For more detailed data, you can explore the Download section to access the full dataset.