CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.414 rna-evm.model.Chr18.414 Chr18 16517640 16517855 uncharacterized protein nan nan
gene-evm.TU.Chr18.415 rna-evm.model.Chr18.415 Chr18 16530155 16531794 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0016020 K04214
gene-evm.TU.Chr18.416 rna-evm.model.Chr18.416 Chr18 16556054 16710174 PREDICTED: Low-density lipoprotein receptor-related protein 2 GO:0005509;GO:0005515 K06233
gene-evm.TU.Chr18.417 rna-evm.model.Chr18.417 Chr18 16769833 16775572 PREDICTED: Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C nan K13748
gene-evm.TU.Chr18.421 rna-evm.model.Chr18.421 Chr18 16985003 16985269 uncharacterized protein nan K06858
gene-evm.TU.Chr18.422 rna-evm.model.Chr18.422 Chr18 16985455 16986552 uncharacterized protein nan nan
gene-evm.TU.Chr18.425 rna-evm.model.Chr18.425 Chr18 17093812 17105318 uncharacterized protein nan K11627
gene-evm.TU.Chr18.426 rna-evm.model.Chr18.426 Chr18 17131185 17136975 PREDICTED: Zinc finger MYM-type protein 1 GO:0046983 K24642
gene-evm.TU.Chr18.427 rna-evm.model.Chr18.427 Chr18 17150502 17163855 uncharacterized protein nan K02159
gene-evm.TU.Chr18.428 rna-evm.model.Chr18.428 Chr18 17167620 17174859 PREDICTED: squid nan nan

For more detailed data, you can explore the Download section to access the full dataset.