CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.388_evm.TU.Chr18.389 rna-evm.model.Chr18.388_evm.model.Chr18.389 Chr18 15791236 15815119 PREDICTED: Integrator complex subunit 9 GO:0016180;GO:0032039 K13146
gene-evm.TU.Chr18.39 rna-evm.model.Chr18.39.1 Chr18 1709672 1760792 PREDICTED: N-acetylneuraminate 9-O-acetyltransferase nan K03377
gene-evm.TU.Chr18.390 rna-evm.model.Chr18.390 Chr18 15816397 15818864 PREDICTED: Serine/threonine-protein kinase ULK4 nan K17545
gene-evm.TU.Chr18.391 rna-evm.model.Chr18.391 Chr18 15869717 15890369 PREDICTED: Serine/threonine-protein kinase ULK4 GO:0004672;GO:0005524;GO:0006468 K17545
gene-evm.TU.Chr18.392 rna-evm.model.Chr18.392 Chr18 15896692 15916984 PREDICTED: E3 ubiquitin-protein ligase NRDP1 GO:0004842;GO:0016567;GO:0061630 K11981
gene-evm.TU.Chr18.393 rna-evm.model.Chr18.393 Chr18 15931819 15996022 PREDICTED: La-related protein 4 nan K18763
gene-evm.TU.Chr18.395 rna-evm.model.Chr18.395 Chr18 16018119 16035044 PREDICTED: Transcription factor Sp9 GO:0003676 K09199
gene-evm.TU.Chr18.397 rna-evm.model.Chr18.397 Chr18 16075098 16105158 PREDICTED: Transcription factor Sp9 GO:0003676 K09199
gene-evm.TU.Chr18.398 rna-evm.model.Chr18.398 Chr18 16116308 16139766 PREDICTED: WD repeat-containing protein 86 GO:0005515 K24756
gene-evm.TU.Chr18.399 rna-evm.model.Chr18.399 Chr18 16148019 16152244 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 GO:0005739;GO:0005747;GO:0022900 K03959

For more detailed data, you can explore the Download section to access the full dataset.