CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.377 rna-evm.model.Chr18.377 Chr18 15350577 15360439 PREDICTED: Ubiquitin-like modifier-activating enzyme 5 GO:0008641 K12164
gene-evm.TU.Chr18.378 rna-evm.model.Chr18.378 Chr18 15363430 15376273 PREDICTED: Pleckstrin homology domain-containing family A member 8 GO:0005737;GO:0120009;GO:0120013 K08051
gene-evm.TU.Chr18.379 rna-evm.model.Chr18.379 Chr18 15389367 15397276 PREDICTED: Methionyl-tRNA formyltransferase, mitochondrial GO:0009058;GO:0016742 K00604
gene-evm.TU.Chr18.38 rna-evm.model.Chr18.38 Chr18 1699638 1702665 PREDICTED: Eukaryotic translation initiation factor eIF1 GO:0003743;GO:0006413 K03113
gene-evm.TU.Chr18.382 rna-evm.model.Chr18.382 Chr18 15535463 15552156 PREDICTED: Cell number regulator 3 nan nan
gene-evm.TU.Chr18.383 rna-evm.model.Chr18.383 Chr18 15552538 15554160 uncharacterized protein nan nan
gene-evm.TU.Chr18.384 rna-evm.model.Chr18.384.1 Chr18 15613468 15663460 PREDICTED: myb-like protein A nan K13804
gene-evm.TU.Chr18.385 rna-evm.model.Chr18.385 Chr18 15648530 15654944 PREDICTED: Endo-1,4-beta-xylanase B nan K12056
gene-evm.TU.Chr18.386 rna-evm.model.Chr18.386 Chr18 15695218 15721578 PREDICTED: ADAM 17-like protease GO:0004222;GO:0006508 K06059
gene-evm.TU.Chr18.387 rna-evm.model.Chr18.387 Chr18 15731732 15767976 PREDICTED: Acyl-CoA dehydrogenase family member 10 GO:0016627;GO:0050660;GO:0055114 K11729

For more detailed data, you can explore the Download section to access the full dataset.