CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.366 rna-evm.model.Chr18.366 Chr18 15079754 15080745 PREDICTED: IgGFc-binding protein nan nan
gene-evm.TU.Chr18.368 rna-evm.model.Chr18.368 Chr18 15089497 15089940 PREDICTED: Mariner Mos1 transposase nan K21406
gene-evm.TU.Chr18.369 rna-evm.model.Chr18.369 Chr18 15092910 15129025 PREDICTED: Protocadherin Fat 1 nan K06052
gene-evm.TU.Chr18.37 rna-evm.model.Chr18.37.1 Chr18 1639395 1691839 PREDICTED: Spermatogenesis-associated serine-rich protein 2 nan K22260
gene-evm.TU.Chr18.370 rna-evm.model.Chr18.370 Chr18 15136989 15139150 uncharacterized protein nan nan
gene-evm.TU.Chr18.371 rna-evm.model.Chr18.371 Chr18 15145479 15147696 uncharacterized protein nan nan
gene-evm.TU.Chr18.372 rna-evm.model.Chr18.372 Chr18 15157231 15159501 uncharacterized protein nan nan
gene-evm.TU.Chr18.373 rna-evm.model.Chr18.373 Chr18 15161480 15208233 uncharacterized protein nan nan
gene-evm.TU.Chr18.375 rna-evm.model.Chr18.375 Chr18 15227766 15283845 PREDICTED: slit 1 nan K06052
gene-evm.TU.Chr18.376 rna-evm.model.Chr18.376 Chr18 15341608 15345010 PREDICTED: Beta-1,3-galactosyltransferase 5 (Fragment) GO:0006486;GO:0008378;GO:0016020 K03877

For more detailed data, you can explore the Download section to access the full dataset.