CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.346 rna-evm.model.Chr18.346 Chr18 14440019 14467852 PREDICTED: Thyroid hormone receptor alpha GO:0003677;GO:0003700;GO:0003707;GO:0004879;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K08362
gene-evm.TU.Chr18.348 rna-evm.model.Chr18.348 Chr18 14534831 14536269 PREDICTED: Neuropeptide Y receptor type 1 GO:0004930;GO:0007186;GO:0016020 K04204
gene-evm.TU.Chr18.349 rna-evm.model.Chr18.349 Chr18 14540673 14543449 PREDICTED: Protein transport protein Sec61 subunit beta GO:0005784;GO:0006886 K09481
gene-evm.TU.Chr18.35 rna-evm.model.Chr18.35 Chr18 1612611 1615471 uncharacterized protein nan K06646
gene-evm.TU.Chr18.350 rna-evm.model.Chr18.350 Chr18 14545425 14559643 PREDICTED: LETM1 domain-containing protein 1 GO:0043022 K17800
gene-evm.TU.Chr18.351 rna-evm.model.Chr18.351 Chr18 14568032 14599634 PREDICTED: WW domain-containing adapter protein with coiled-coil GO:0005515 K23884
gene-evm.TU.Chr18.352 rna-evm.model.Chr18.352 Chr18 14605800 14610401 PREDICTED: Zinc finger protein 85 nan K20738
gene-evm.TU.Chr18.353 rna-evm.model.Chr18.353 Chr18 14615585 14663523 uncharacterized protein nan nan
gene-evm.TU.Chr18.354 rna-evm.model.Chr18.354 Chr18 14700195 14722894 PREDICTED: Sodium-driven chloride bicarbonate exchanger GO:0005452;GO:0006820;GO:0008509;GO:0016020;GO:0016020 K13861
gene-evm.TU.Chr18.355 rna-evm.model.Chr18.355 Chr18 14730711 14750950 PREDICTED: Tubulin delta chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K10390

For more detailed data, you can explore the Download section to access the full dataset.