CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.331 rna-evm.model.Chr18.331 Chr18 14065386 14066531 PREDICTED: Beta-1,3-galactosyltransferase 5 GO:0006486;GO:0008378;GO:0016020 K03877
gene-evm.TU.Chr18.333 rna-evm.model.Chr18.333 Chr18 14094001 14095084 PREDICTED: Beta-1,3-galactosyltransferase 5 GO:0006486;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr18.338 rna-evm.model.Chr18.338 Chr18 14156937 14160660 PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 nan K11714
gene-evm.TU.Chr18.339 rna-evm.model.Chr18.339 Chr18 14171193 14177271 uncharacterized protein nan K17834
gene-evm.TU.Chr18.34 rna-evm.model.Chr18.34 Chr18 1553523 1594504 PREDICTED: Flagellum-associated coiled-coil domain-containing protein 1 nan K25631
gene-evm.TU.Chr18.340 rna-evm.model.Chr18.340.1 Chr18 14184505 14216693 PREDICTED: Neurexin-1a nan K07377
gene-evm.TU.Chr18.341 rna-evm.model.Chr18.341 Chr18 14221641 14301688 PREDICTED: Neurexin-1 nan K07377
gene-evm.TU.Chr18.342 rna-evm.model.Chr18.342 Chr18 14309151 14316854 PREDICTED: Pre-mRNA-splicing factor CWC25 homolog nan K25030
gene-evm.TU.Chr18.343 rna-evm.model.Chr18.343 Chr18 14332017 14360909 PREDICTED: Islet cell autoantigen 1 GO:0019904 K19863
gene-evm.TU.Chr18.344 rna-evm.model.Chr18.344 Chr18 14368813 14370726 PREDICTED: Pyroglutamylated RF-amide peptide receptor GO:0004930;GO:0007186;GO:0016020 K04238

For more detailed data, you can explore the Download section to access the full dataset.