CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.304 rna-evm.model.Chr18.304 Chr18 12810415 12838843 uncharacterized protein nan nan
gene-evm.TU.Chr18.305 rna-evm.model.Chr18.305 Chr18 12865549 12892692 PREDICTED: Collagen alpha-6(VI) chain GO:0005509;GO:0005515 K06238
gene-evm.TU.Chr18.306 rna-evm.model.Chr18.306 Chr18 12899689 12947615 PREDICTED: Collagen alpha-6(VI) chain nan K06594
gene-evm.TU.Chr18.308 rna-evm.model.Chr18.308 Chr18 13327398 13349899 PREDICTED: Nuclear hormone receptor E75 GO:0003677;GO:0003700;GO:0003707;GO:0004879;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K08701
gene-evm.TU.Chr18.309 rna-evm.model.Chr18.309 Chr18 13359872 13362870 PREDICTED: Coiled-coil domain-containing protein 103 nan K23731
gene-evm.TU.Chr18.31 rna-evm.model.Chr18.31 Chr18 1504258 1505739 uncharacterized protein nan nan
gene-evm.TU.Chr18.310 rna-evm.model.Chr18.310 Chr18 13372909 13378406 PREDICTED: Myoneurin GO:0003676 K09191
gene-evm.TU.Chr18.311 rna-evm.model.Chr18.311 Chr18 13390810 13397843 PREDICTED: BTB/POZ domain-containing protein 6 GO:0005515 K10478
gene-evm.TU.Chr18.312 rna-evm.model.Chr18.312 Chr18 13402251 13410595 PREDICTED: Transcription elongation factor A N-terminal and central domain-containing protein 2 GO:0005634;GO:0006351 K03145
gene-evm.TU.Chr18.313 rna-evm.model.Chr18.313 Chr18 13414798 13421906 PREDICTED: UPF0428 protein CXorf56 homolog nan K24996

For more detailed data, you can explore the Download section to access the full dataset.