CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.273 rna-evm.model.Chr18.273 Chr18 10017639 10018784 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr18.275 rna-evm.model.Chr18.275 Chr18 10135918 10171695 PREDICTED: Cadherin-related tumor suppressor GO:0005509;GO:0007156;GO:0016020;GO:0098609 K16669
gene-evm.TU.Chr18.276 rna-evm.model.Chr18.276 Chr18 10216084 10253555 PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs adt-2 GO:0004222;GO:0006508 K08621
gene-evm.TU.Chr18.277 rna-evm.model.Chr18.277 Chr18 10315050 10321813 PREDICTED: Hemicentin-1 nan K16857
gene-evm.TU.Chr18.279 rna-evm.model.Chr18.279 Chr18 10333085 10334556 PREDICTED: Ninjurin-2 GO:0007155;GO:0016020;GO:0042246 K20032
gene-evm.TU.Chr18.280 rna-evm.model.Chr18.280 Chr18 10336408 10339569 PREDICTED: Visual pigment-like receptor peropsin GO:0004930;GO:0007186;GO:0016020 K04253
gene-evm.TU.Chr18.283 rna-evm.model.Chr18.283 Chr18 10560984 10571595 PREDICTED: Protein GVQW3 GO:0008270 K21233
gene-evm.TU.Chr18.286 rna-evm.model.Chr18.286 Chr18 10902333 10903133 PREDICTED: Protein PELPK1 nan K16532
gene-evm.TU.Chr18.287 rna-evm.model.Chr18.287 Chr18 10905135 10906166 uncharacterized protein nan K02800
gene-evm.TU.Chr18.288 rna-evm.model.Chr18.288 Chr18 10910516 10974712 PREDICTED: Chitin synthase chs-2 GO:0016758 K00698

For more detailed data, you can explore the Download section to access the full dataset.