CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.289 rna-evm.model.Chr18.289 Chr18 10988499 11047882 PREDICTED: Thioredoxin domain-containing protein 3 homolog GO:0004550;GO:0006165;GO:0006183;GO:0006228;GO:0006241;GO:0045454 K19868
gene-evm.TU.Chr18.29 rna-evm.model.Chr18.29 Chr18 1440077 1448596 PREDICTED: Transcription factor Sp9 GO:0003676 K09199
gene-evm.TU.Chr18.290 rna-evm.model.Chr18.290 Chr18 11048118 11092404 PREDICTED: Vacuolar protein sorting-associated protein 8 homolog GO:0005515;GO:0006886;GO:0016192 K20178
gene-evm.TU.Chr18.294 rna-evm.model.Chr18.294 Chr18 11766725 11778992 uncharacterized protein nan nan
gene-evm.TU.Chr18.295 rna-evm.model.Chr18.295 Chr18 11952288 11955346 PREDICTED: Complement C1q tumor necrosis factor-related protein 7 nan K23284
gene-evm.TU.Chr18.298 rna-evm.model.Chr18.298 Chr18 12334515 12351334 PREDICTED: Transcription initiation factor TFIID subunit 5 GO:0005515;GO:0005669 K03130
gene-evm.TU.Chr18.299 rna-evm.model.Chr18.299 Chr18 12354807 12380355 PREDICTED: Transcription initiation factor TFIID subunit 5 GO:0005215;GO:0005515;GO:0008521;GO:0016020;GO:0016020;GO:0055085 K03130
gene-evm.TU.Chr18.30 rna-evm.model.Chr18.30 Chr18 1486394 1502873 PREDICTED: WD repeat-containing protein 86 GO:0005515 K24756
gene-evm.TU.Chr18.302 rna-evm.model.Chr18.302 Chr18 12431234 12589427 PREDICTED: Obscurin GO:0004672;GO:0005515;GO:0005524;GO:0006468 K17341
gene-evm.TU.Chr18.303 rna-evm.model.Chr18.303 Chr18 12654511 12685854 PREDICTED: Collagen alpha-6(VI) chain GO:0005509;GO:0005515 K06238

For more detailed data, you can explore the Download section to access the full dataset.