CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.260 rna-evm.model.Chr18.260 Chr18 9429966 9532475 PREDICTED: Uncharacterized protein KIAA2012 homolog nan K13171
gene-evm.TU.Chr18.261 rna-evm.model.Chr18.261 Chr18 9540059 9541282 uncharacterized protein nan nan
gene-evm.TU.Chr18.263 rna-evm.model.Chr18.263 Chr18 9571372 9576171 PREDICTED: Cell wall protein DAN4 nan K00786
gene-evm.TU.Chr18.264 rna-evm.model.Chr18.264 Chr18 9578171 9587238 PREDICTED: L-threonine ammonia-lyase nan K01754
gene-evm.TU.Chr18.265 rna-evm.model.Chr18.265 Chr18 9597907 9610893 PREDICTED: L-threonine ammonia-lyase nan K01754
gene-evm.TU.Chr18.266 rna-evm.model.Chr18.266 Chr18 9658182 9662773 PREDICTED: Neuropeptide FF receptor 1 GO:0004930;GO:0007186;GO:0016020 K05053
gene-evm.TU.Chr18.268 rna-evm.model.Chr18.268 Chr18 9720764 9721243 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:3.6.4.-] nan nan
gene-evm.TU.Chr18.269 rna-evm.model.Chr18.269 Chr18 9737463 9746153 uncharacterized protein nan K26981
gene-evm.TU.Chr18.270 rna-evm.model.Chr18.270 Chr18 9751023 9781165 uncharacterized protein nan nan
gene-evm.TU.Chr18.272 rna-evm.model.Chr18.272 Chr18 9937260 9938830 PREDICTED: Lactose-binding lectin l-2 nan K10059

For more detailed data, you can explore the Download section to access the full dataset.