CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.246 rna-evm.model.Chr18.246 Chr18 8999569 9010182 PREDICTED: 2',5'-phosphodiesterase 12 nan K19612
gene-evm.TU.Chr18.247 rna-evm.model.Chr18.247 Chr18 9012031 9017217 PREDICTED: RNA-binding region-containing protein 3 GO:0003676 K13157
gene-evm.TU.Chr18.248 rna-evm.model.Chr18.248 Chr18 9032619 9033431 PREDICTED: Class E basic helix-loop-helix protein 22 GO:0046983 K09086
gene-evm.TU.Chr18.251 rna-evm.model.Chr18.251 Chr18 9127782 9144005 PREDICTED: Galactosylceramide sulfotransferase GO:0001733;GO:0005794;GO:0009247;GO:0016020 K09676
gene-evm.TU.Chr18.252 rna-evm.model.Chr18.252 Chr18 9147212 9165967 PREDICTED: Metallophosphoesterase domain-containing protein 1 GO:0003676;GO:0016787 K09191
gene-evm.TU.Chr18.253 rna-evm.model.Chr18.253 Chr18 9168688 9187589 PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 3 GO:0004222;GO:0006508 K08621
gene-evm.TU.Chr18.254 rna-evm.model.Chr18.254 Chr18 9188599 9191007 PREDICTED: Complement C1q-like protein 2 nan K23284
gene-evm.TU.Chr18.257 rna-evm.model.Chr18.257 Chr18 9346526 9347130 PREDICTED: Putative apoptosis inhibitor ORF99 nan K16061
gene-evm.TU.Chr18.258 rna-evm.model.Chr18.258 Chr18 9391811 9394027 PREDICTED: 52 kDa repressor of the inhibitor of the protein kinase nan K24674
gene-evm.TU.Chr18.26 rna-evm.model.Chr18.26 Chr18 1384714 1400089 PREDICTED: Transcription factor Sp9 GO:0003676 K09199

For more detailed data, you can explore the Download section to access the full dataset.