CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.23 rna-evm.model.Chr18.23.1 Chr18 1117986 1156041 PREDICTED: Protein FAM126B nan K21844
gene-evm.TU.Chr18.230 rna-evm.model.Chr18.230 Chr18 8661657 8679307 PREDICTED: Interferon-induced protein 44-like GO:0005525 K10429
gene-evm.TU.Chr18.231 rna-evm.model.Chr18.231 Chr18 8689297 8694601 uncharacterized protein nan K02857
gene-evm.TU.Chr18.232 rna-evm.model.Chr18.232 Chr18 8709456 8714001 uncharacterized protein nan K09784
gene-evm.TU.Chr18.234 rna-evm.model.Chr18.234 Chr18 8743473 8746775 uncharacterized protein nan nan
gene-evm.TU.Chr18.24 rna-evm.model.Chr18.24 Chr18 1294265 1360690 PREDICTED: La-related protein 4 nan K18763
gene-evm.TU.Chr18.242 rna-evm.model.Chr18.242 Chr18 8893804 8909738 PREDICTED: Inositol-trisphosphate 3-kinase homolog GO:0016301;GO:0032958 K00911
gene-evm.TU.Chr18.243 rna-evm.model.Chr18.243 Chr18 8915148 8915876 PREDICTED: 1D-myo-inositol-triphosphate 3-kinase [EC:2.7.1.127] nan K05657
gene-evm.TU.Chr18.244 rna-evm.model.Chr18.244 Chr18 8940670 8957010 PREDICTED: DNA primase small subunit GO:0003896;GO:0006269 K02684
gene-evm.TU.Chr18.245 rna-evm.model.Chr18.245 Chr18 8957230 8962415 PREDICTED: DNA primase small subunit GO:0003896;GO:0006269 K02684

For more detailed data, you can explore the Download section to access the full dataset.