CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.216 rna-evm.model.Chr18.216 Chr18 8177886 8188084 PREDICTED: Monocarboxylate transporter 9 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr18.217 rna-evm.model.Chr18.217 Chr18 8193708 8197907 PREDICTED: Activin receptor type-1 GO:0004672;GO:0004675;GO:0005524;GO:0006468;GO:0007178;GO:0016020 K04675
gene-evm.TU.Chr18.218 rna-evm.model.Chr18.218 Chr18 8199458 8200200 uncharacterized protein nan nan
gene-evm.TU.Chr18.219 rna-evm.model.Chr18.219 Chr18 8235305 8288859 PREDICTED: Hemicentin-1 nan K08621
gene-evm.TU.Chr18.22 rna-evm.model.Chr18.22 Chr18 1047127 1050644 PREDICTED: Activin receptor type-1 GO:0004672;GO:0004675;GO:0005524;GO:0006468;GO:0007178;GO:0016020 K04675
gene-evm.TU.Chr18.223 rna-evm.model.Chr18.223 Chr18 8353836 8465055 PREDICTED: Cys-loop ligand-gated ion channel GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05186
gene-evm.TU.Chr18.224 rna-evm.model.Chr18.224 Chr18 8465091 8465396 uncharacterized protein nan nan
gene-evm.TU.Chr18.225 rna-evm.model.Chr18.225 Chr18 8478916 8487243 PREDICTED: Uridine 5'-monophosphate synthase GO:0004590;GO:0004930;GO:0006207;GO:0007186;GO:0016020 K04218
gene-evm.TU.Chr18.226 rna-evm.model.Chr18.226 Chr18 8511607 8548367 uncharacterized protein GO:0005730 K25818
gene-evm.TU.Chr18.227 rna-evm.model.Chr18.227 Chr18 8556993 8568609 PREDICTED: Serine/threonine-protein kinase PAK 3 GO:0004672;GO:0005524;GO:0006468 K04409

For more detailed data, you can explore the Download section to access the full dataset.