CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.206 rna-evm.model.Chr18.206 Chr18 7811447 7812361 PREDICTED: shingomyelin synthase [EC:2.7.8.27] nan nan
gene-evm.TU.Chr18.207 rna-evm.model.Chr18.207 Chr18 7818492 7822950 PREDICTED: Cadherin-1 GO:0005509;GO:0007156;GO:0016020 K16669
gene-evm.TU.Chr18.208 rna-evm.model.Chr18.208 Chr18 7862806 7866903 PREDICTED: Lactose-binding lectin l-2 nan K10060
gene-evm.TU.Chr18.21 rna-evm.model.Chr18.21 Chr18 1044833 1045531 uncharacterized protein nan nan
gene-evm.TU.Chr18.210 rna-evm.model.Chr18.210 Chr18 7896650 7902071 PREDICTED: Cadherin EGF LAG seven-pass G-type receptor 1 GO:0005509;GO:0007156;GO:0016020 K16669
gene-evm.TU.Chr18.211 rna-evm.model.Chr18.211 Chr18 7915000 7921503 PREDICTED: Cadherin EGF LAG seven-pass G-type receptor 1 GO:0005509;GO:0007156;GO:0016020 K16669
gene-evm.TU.Chr18.212 rna-evm.model.Chr18.212 Chr18 7954291 7977463 uncharacterized protein GO:0005515;GO:0007165 K02832
gene-evm.TU.Chr18.213 rna-evm.model.Chr18.213 Chr18 7991658 8116533 PREDICTED: Hemicentin-1 nan K16857
gene-evm.TU.Chr18.214 rna-evm.model.Chr18.214 Chr18 8124853 8125033 PREDICTED: Hemicentin-1 nan K08621
gene-evm.TU.Chr18.215 rna-evm.model.Chr18.215 Chr18 8143984 8145289 PREDICTED: MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 12 GO:0016020;GO:0055085 K08190

For more detailed data, you can explore the Download section to access the full dataset.