CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.192 rna-evm.model.Chr18.192 Chr18 7556534 7556923 uncharacterized protein nan K22482
gene-evm.TU.Chr18.193 rna-evm.model.Chr18.193 Chr18 7557572 7561245 PREDICTED: LPXTG cell wall anchor domain-containing protein nan K16731
gene-evm.TU.Chr18.194_evm.TU.Chr18.195 rna-evm.model.Chr18.194_evm.model.Chr18.195 Chr18 7564372 7596098 PREDICTED: DnaJ homolog subfamily C member 2 nan K09522
gene-evm.TU.Chr18.196 rna-evm.model.Chr18.196 Chr18 7598796 7608696 PREDICTED: Monoglyceride lipase nan K01054
gene-evm.TU.Chr18.199 rna-evm.model.Chr18.199 Chr18 7662334 7691294 PREDICTED: Sodium-driven chloride bicarbonate exchanger GO:0005452;GO:0006820;GO:0008509;GO:0016020;GO:0016020 K13858
gene-evm.TU.Chr18.20 rna-evm.model.Chr18.20 Chr18 1033101 1034409 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan nan
gene-evm.TU.Chr18.202 rna-evm.model.Chr18.202 Chr18 7739942 7741969 PREDICTED: CD109 antigen nan K26653
gene-evm.TU.Chr18.203 rna-evm.model.Chr18.203 Chr18 7752425 7754877 uncharacterized protein nan K22188
gene-evm.TU.Chr18.204 rna-evm.model.Chr18.204 Chr18 7759619 7790026 PREDICTED: Presequence protease, mitochondrial GO:0006508 K06972
gene-evm.TU.Chr18.205 rna-evm.model.Chr18.205 Chr18 7797666 7804950 PREDICTED: Ankyrin repeat and SOCS box protein 8 GO:0005515 K10330

For more detailed data, you can explore the Download section to access the full dataset.