CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.179 rna-evm.model.Chr18.179 Chr18 7125080 7129313 uncharacterized protein nan nan
gene-evm.TU.Chr18.18 rna-evm.model.Chr18.18 Chr18 772691 902841 PREDICTED: Hemicentin-1 nan K08621
gene-evm.TU.Chr18.180 rna-evm.model.Chr18.180 Chr18 7152049 7158758 uncharacterized protein nan K15761
gene-evm.TU.Chr18.181 rna-evm.model.Chr18.181 Chr18 7182596 7190395 PREDICTED: Putative tyrosinase-like protein tyr-3 GO:0005507;GO:0016491;GO:0016716;GO:0033162;GO:0042438;GO:0055114 K00505
gene-evm.TU.Chr18.182 rna-evm.model.Chr18.182.2 Chr18 7216719 7231374 PREDICTED: Melatonin receptor type 1A-A GO:0004930;GO:0007186;GO:0016020 K04286
gene-evm.TU.Chr18.184 rna-evm.model.Chr18.184 Chr18 7317550 7348287 PREDICTED: Endoplasmic reticulum resident protein 44 GO:0045454 K17264
gene-evm.TU.Chr18.187 rna-evm.model.Chr18.187 Chr18 7369436 7399346 PREDICTED: Metalloprotease mig-17 GO:0004222;GO:0006508 K08632
gene-evm.TU.Chr18.188 rna-evm.model.Chr18.188 Chr18 7419044 7428360 PREDICTED: Fucolectin nan K08187
gene-evm.TU.Chr18.19 rna-evm.model.Chr18.19 Chr18 970900 1026690 PREDICTED: Hemicentin-1 nan K08619
gene-evm.TU.Chr18.190 rna-evm.model.Chr18.190 Chr18 7495658 7535667 PREDICTED: Low-density lipoprotein receptor-related protein 4 nan K20051

For more detailed data, you can explore the Download section to access the full dataset.