CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.155 rna-evm.model.Chr18.155 Chr18 6369955 6384302 PREDICTED: Natural killer cells antigen CD94 nan K06468
gene-evm.TU.Chr18.157 rna-evm.model.Chr18.157 Chr18 6401122 6413096 PREDICTED: Carbohydrate sulfotransferase 14 GO:0008146;GO:0016020 K07779
gene-evm.TU.Chr18.158 rna-evm.model.Chr18.158 Chr18 6426878 6437995 uncharacterized protein nan K05856
gene-evm.TU.Chr18.159 rna-evm.model.Chr18.159 Chr18 6441019 6469739 PREDICTED: Tyrosine-protein kinase HCK GO:0004672;GO:0005515;GO:0005524;GO:0006468 K05856
gene-evm.TU.Chr18.165 rna-evm.model.Chr18.165 Chr18 6676786 6684436 uncharacterized protein nan nan
gene-evm.TU.Chr18.167 rna-evm.model.Chr18.167 Chr18 6788324 6788757 PREDICTED: Mariner Mos1 transposase nan nan
gene-evm.TU.Chr18.17 rna-evm.model.Chr18.17 Chr18 640927 693591 PREDICTED: Vacuolar protein sorting-associated protein 8 homolog GO:0006886;GO:0016192 K20178
gene-evm.TU.Chr18.171 rna-evm.model.Chr18.171 Chr18 6886148 6886366 uncharacterized protein nan nan
gene-evm.TU.Chr18.175 rna-evm.model.Chr18.175 Chr18 7028903 7029647 PREDICTED: zinc finger MYM-type protein 2-like nan nan
gene-evm.TU.Chr18.178 rna-evm.model.Chr18.178 Chr18 7064908 7072937 PREDICTED: Mucin-like protein (Fragment) nan K08621

For more detailed data, you can explore the Download section to access the full dataset.