CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.141 rna-evm.model.Chr18.141 Chr18 6088897 6093413 PREDICTED: LINE-1 retrotransposable element ORF2 protein nan K26653
gene-evm.TU.Chr18.142 rna-evm.model.Chr18.142 Chr18 6095880 6096899 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K03745
gene-evm.TU.Chr18.144 rna-evm.model.Chr18.144 Chr18 6111716 6113005 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr18.147 rna-evm.model.Chr18.147 Chr18 6145262 6147205 PREDICTED: BTB and MATH domain-containing protein 38 GO:0005515 K10478
gene-evm.TU.Chr18.148 rna-evm.model.Chr18.148 Chr18 6152329 6153921 PREDICTED: BTB and MATH domain-containing protein 38 GO:0005515 K10478
gene-evm.TU.Chr18.149 rna-evm.model.Chr18.149 Chr18 6158326 6159422 PREDICTED: BTB and MATH domain-containing protein 38 GO:0005515 K10478
gene-evm.TU.Chr18.150 rna-evm.model.Chr18.150 Chr18 6165451 6179255 PREDICTED: Toll-like receptor 2 GO:0005515;GO:0007165 K18808
gene-evm.TU.Chr18.151 rna-evm.model.Chr18.151 Chr18 6188970 6196740 PREDICTED: IgA FC receptor nan K24489
gene-evm.TU.Chr18.153 rna-evm.model.Chr18.153 Chr18 6216889 6319567 PREDICTED: Nck-associated protein 5 nan K03529
gene-evm.TU.Chr18.154 rna-evm.model.Chr18.154 Chr18 6350782 6364730 PREDICTED: Cyclin-Y-like protein 1 nan K09645

For more detailed data, you can explore the Download section to access the full dataset.