CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.131 rna-evm.model.Chr18.131 Chr18 5925347 5954308 PREDICTED: Cytochrome P450 1B1 GO:0004497;GO:0005506;GO:0005507;GO:0016705;GO:0016715;GO:0020037;GO:0055114 K07410
gene-evm.TU.Chr18.132 rna-evm.model.Chr18.132 Chr18 5960585 5962616 uncharacterized protein nan nan
gene-evm.TU.Chr18.133 rna-evm.model.Chr18.133 Chr18 5976038 5987080 uncharacterized protein nan nan
gene-evm.TU.Chr18.134 rna-evm.model.Chr18.134 Chr18 5998538 6004337 PREDICTED: Galactosylceramide sulfotransferase GO:0001733;GO:0005794;GO:0009247;GO:0016020 K01019
gene-evm.TU.Chr18.135 rna-evm.model.Chr18.135 Chr18 6007932 6009221 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr18.136 rna-evm.model.Chr18.136 Chr18 6012847 6015777 PREDICTED: BTB and MATH domain-containing protein 38 GO:0005515 K10478
gene-evm.TU.Chr18.138 rna-evm.model.Chr18.138 Chr18 6034758 6035945 PREDICTED: BTB and MATH domain-containing protein 36 GO:0005515 K11494
gene-evm.TU.Chr18.139 rna-evm.model.Chr18.139 Chr18 6071612 6075945 PREDICTED: Galactosylceramide sulfotransferase GO:0001733;GO:0005794;GO:0009247;GO:0016020 K01019
gene-evm.TU.Chr18.14 rna-evm.model.Chr18.14 Chr18 310203 347032 PREDICTED: Chitin synthase chs-2 GO:0016758 K00698
gene-evm.TU.Chr18.140 rna-evm.model.Chr18.140 Chr18 6078406 6079116 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.