CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.1221 rna-evm.model.Chr18.1221 Chr18 46385971 46386889 PREDICTED: Tigger transposable element-derived protein 2 GO:0003676 K11496
gene-evm.TU.Chr18.1225 rna-evm.model.Chr18.1225 Chr18 46430780 46442954 uncharacterized protein nan K07378
gene-evm.TU.Chr18.1226 rna-evm.model.Chr18.1226 Chr18 46472988 46504723 PREDICTED: Chitin synthase chs-2 GO:0016758 K00698
gene-evm.TU.Chr18.123 rna-evm.model.Chr18.123 Chr18 5839363 5842717 PREDICTED: Papilin GO:0004867 K03909
gene-evm.TU.Chr18.125 rna-evm.model.Chr18.125 Chr18 5851886 5854524 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr18.126 rna-evm.model.Chr18.126 Chr18 5866594 5874683 uncharacterized protein GO:0016020 K23896
gene-evm.TU.Chr18.127 rna-evm.model.Chr18.127 Chr18 5879145 5883921 uncharacterized protein GO:0016020 K23896
gene-evm.TU.Chr18.129 rna-evm.model.Chr18.129 Chr18 5898368 5907389 PREDICTED: Interferon-induced helicase C domain-containing protein 1 nan K16400
gene-evm.TU.Chr18.13 rna-evm.model.Chr18.13 Chr18 281427 283387 PREDICTED: Protein FAM186A nan K17821
gene-evm.TU.Chr18.130 rna-evm.model.Chr18.130 Chr18 5910399 5918623 uncharacterized protein GO:0008191 K16866

For more detailed data, you can explore the Download section to access the full dataset.