CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.1205 rna-evm.model.Chr18.1205 Chr18 45647945 45652191 PREDICTED: scavenger receptor class F member 1-like nan K08654
gene-evm.TU.Chr18.1206 rna-evm.model.Chr18.1206 Chr18 45675679 45678931 PREDICTED: Tenascin-X nan K08654
gene-evm.TU.Chr18.1208 rna-evm.model.Chr18.1208 Chr18 45730709 45811006 PREDICTED: Multiple epidermal growth factor-like domains protein 6 nan K08654
gene-evm.TU.Chr18.121 rna-evm.model.Chr18.121 Chr18 5787761 5815417 PREDICTED: Stromal cell-derived factor 2 GO:0016020 K00728
gene-evm.TU.Chr18.1211 rna-evm.model.Chr18.1211 Chr18 45934723 46055569 PREDICTED: Receptor-type tyrosine-protein phosphatase kappa GO:0004725;GO:0006470;GO:0016311;GO:0016791 K13297
gene-evm.TU.Chr18.1213 rna-evm.model.Chr18.1213 Chr18 46210055 46210318 PREDICTED: Tigger transposable element-derived protein 1 GO:0003676 K11496
gene-evm.TU.Chr18.1216 rna-evm.model.Chr18.1216 Chr18 46256380 46257369 PREDICTED: tenascin nan K08654
gene-evm.TU.Chr18.1217 rna-evm.model.Chr18.1217 Chr18 46267640 46280714 PREDICTED: Tenascin-X nan K24319
gene-evm.TU.Chr18.1218 rna-evm.model.Chr18.1218 Chr18 46283345 46286293 PREDICTED: Tenascin-X nan K18033
gene-evm.TU.Chr18.122 rna-evm.model.Chr18.122 Chr18 5816377 5823583 PREDICTED: Transcription factor Sp5 GO:0003676 K09195

For more detailed data, you can explore the Download section to access the full dataset.