CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.1193 rna-evm.model.Chr18.1193 Chr18 45154619 45182614 PREDICTED: Integrase/recombinase xerD homolog GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr18.1194 rna-evm.model.Chr18.1194 Chr18 45370332 45373941 PREDICTED: Mucin-like protein (Fragment) nan K06841
gene-evm.TU.Chr18.1195 rna-evm.model.Chr18.1195 Chr18 45374293 45384837 PREDICTED: NEDD8-conjugating enzyme UBE2F nan K10687
gene-evm.TU.Chr18.1198 rna-evm.model.Chr18.1198 Chr18 45414553 45420631 PREDICTED: Tenascin-X nan K08654
gene-evm.TU.Chr18.1199 rna-evm.model.Chr18.1199 Chr18 45442269 45508349 PREDICTED: Receptor-type tyrosine-protein phosphatase kappa GO:0004725;GO:0006470;GO:0016311;GO:0016791 K06776
gene-evm.TU.Chr18.12 rna-evm.model.Chr18.12 Chr18 204133 265943 PREDICTED: Thioredoxin domain-containing protein 3 homolog GO:0004550;GO:0006165;GO:0006183;GO:0006228;GO:0006241 K19868
gene-evm.TU.Chr18.120 rna-evm.model.Chr18.120 Chr18 5780735 5782004 PREDICTED: Zinc finger protein 62 homolog GO:0003676 K09191
gene-evm.TU.Chr18.1201 rna-evm.model.Chr18.1201 Chr18 45541354 45574816 uncharacterized protein nan K07090
gene-evm.TU.Chr18.1202 rna-evm.model.Chr18.1202 Chr18 45598111 45602806 PREDICTED: Tenascin-X nan K08654
gene-evm.TU.Chr18.1203 rna-evm.model.Chr18.1203 Chr18 45606959 45612992 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.